Sample #220930

Sample #230506

Sample #230506 HD

Sample #240705

Slice 1

Processed human Visium data: SpaceRanger output

Human_ST_visium.zip

Processed human Visium HD data: SpaceRanger output

Human_ST_visium_HD.zip

MERSCOPE Visualizer out for human MERFISH slice

Human_MERFISH_output.zip

Human single-nucleus RNA-seq: CellRanger output

Human_snRNAseq.zip

macaque single-nucleus RNA-seq: CellRanger output

Macaque_snRNAseq.zip

Seurat object of the integrated human Visium data

integrated_visium_sample1&2_SCN_slice_V2.RData

Seurat object of human Visium HD data

slice46_visium_HD_expand_cell_4_seurat_10genes.RData

Seurat object of integrated human snRNA-seq data (All the cells)

integratedSCT_snRNAseq_samples_all_cells.RData

Seurat object of integrated neurons from snRNA-seq data

integratedSCT_snRNAseq_samples_neurons_2025.RData

Seurat object of integrated SCN neurons from snRNA-seq data

integratedSCT_snRNAseq_SCN_neurons_2024.RData

Seurat object contaning all macaque snRNA-seq nuclei

macaque_snRNAseq_allcells.RData

Seurat object of human MERFISH data

Merfish_slice1_5genes_seurat.RData

Cell Chat object for human and mouse SCN neurons

CellChat_object.zip

SCENIC-inferred regulon activity for human SCN neuron cells

3.4_regulonAUC_SCN_subyptes.Rds